Variant report

Variant	rs10175644
Chromosome Location	chr2:171594286-171594287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:171592092..171594510-chr2:171628667..171630981,2	K562	blood:
2	chr2:171592092..171594510-chr2:171627457..171630981,3	K562	blood:
3	chr2:171593069..171595980-chr2:171599016..171601460,4	K562	blood:
4	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
5	chr2:171585442..171587895-chr2:171592856..171594738,2	K562	blood:
6	chr2:171592976..171595346-chr2:171619410..171621517,2	K562	blood:

Variant related genes	Relation type
ENSG00000239467	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165379	0.82[EUR][1000 genomes]
rs10194303	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10930438	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11895153	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12612710	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12613472	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12619010	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12994793	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13028382	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1362489	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1362490	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1894919	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34002163	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3749036	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3764915	0.82[EUR][1000 genomes]
rs3764916	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4132720	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433235	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433238	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433246	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433247	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6433248	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66833017	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6711176	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6723611	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6726371	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6738022	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6757195	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7580460	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7608979	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs869954	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953680	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs954321	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9973711	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171591400-171595000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:171591400-171595200	Weak transcription	Fetal Intestine Large	intestine
4	chr2:171591600-171595200	Weak transcription	Placenta	Placenta
5	chr2:171593200-171598000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:171593600-171595200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:171593800-171595400	Enhancers	NHEK	skin
9	chr2:171594000-171597200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:171594200-171596800	Enhancers	Stomach Mucosa	stomach
12	chr2:171594200-171597600	Enhancers	HMEC	breast

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