Variant report

Variant	rs7608979
Chromosome Location	chr2:171598276-171598277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
2	chr2:171597354..171598921-chr2:171623735..171625957,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10165379	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10175644	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10181282	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10194303	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10930438	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11895153	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12612710	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12613472	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12619010	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12994793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13028382	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362489	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362490	0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1894919	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34002163	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749036	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3764915	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3764916	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4132720	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433235	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433238	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433246	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6433247	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6433248	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66833017	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6711176	0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6723611	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6726371	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6733809	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6738022	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7580460	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs869954	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs953680	0.90[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs954321	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9973711	0.83[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171593600-171600800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:171594000-171600200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:171595200-171600200	Weak transcription	Gastric	stomach
5	chr2:171596200-171600200	Enhancers	K562	blood
6	chr2:171596200-171601200	Weak transcription	HSMMtube	muscle
7	chr2:171596400-171599200	Weak transcription	NH-A	brain
8	chr2:171596600-171598400	Weak transcription	Fetal Intestine Small	intestine
9	chr2:171596800-171599800	Weak transcription	Stomach Mucosa	stomach
10	chr2:171597600-171603800	Weak transcription	HMEC	breast
11	chr2:171597800-171604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:171598000-171603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr2:171598200-171599000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links