Variant report

Variant	rs10165379
Chromosome Location	chr2:171651573-171651574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171637822..171639783-chr2:171650813..171652937,2	K562	blood:

Variant related genes	Relation type
ENSG00000222509	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10168078	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs10175644	0.82[EUR][1000 genomes]
rs10181282	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10194303	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10432420	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10930438	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11895153	0.80[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12613472	0.80[EUR][1000 genomes]
rs12994793	0.91[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13028382	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362489	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362490	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1894919	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34002163	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3764915	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3764916	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4132720	0.80[EUR][1000 genomes]
rs6433246	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6433247	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6433248	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6711176	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6723611	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6726371	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6733809	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6736129	0.86[ASN][1000 genomes]
rs6738022	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6757195	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7608979	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs869954	0.80[EUR][1000 genomes]
rs953680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs954321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9973711	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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