Variant report

Variant	rs9973711
Chromosome Location	chr2:171635393-171635394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:171635326-171635527	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171633926..171636213-chr2:171641664..171644131,2	K562	blood:
2	chr2:171548566..171551496-chr2:171635134..171636707,2	K562	blood:

Variant related genes	Relation type
ENSG00000222509	TF binding region
ERICH2	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10165379	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10175644	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10181282	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10194303	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10432420	0.83[ASN][1000 genomes]
rs10930438	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11895153	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs12612710	0.83[EUR][1000 genomes]
rs12613472	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12619010	0.83[EUR][1000 genomes]
rs12994793	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13028382	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1362489	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1362490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1894919	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2287111	0.83[YRI][hapmap]
rs2883886	0.82[YRI][hapmap]
rs34002163	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3749036	0.85[EUR][1000 genomes]
rs3764915	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3764916	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4132720	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6433235	0.83[EUR][1000 genomes]
rs6433238	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6433246	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6433247	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6433248	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66833017	0.82[EUR][1000 genomes]
rs6711176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6723611	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6726371	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6733809	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6736129	0.82[ASN][1000 genomes]
rs6738022	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6757195	0.83[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6759584	0.84[YRI][hapmap]
rs7580460	0.82[EUR][1000 genomes]
rs7608979	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs869954	0.84[EUR][1000 genomes]
rs953680	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs954321	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629400-171641000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:171630000-171635400	Weak transcription	Fetal Intestine Large	intestine
4	chr2:171630000-171635800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:171630200-171641800	Weak transcription	K562	blood
6	chr2:171634400-171635400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:171634400-171635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:171634600-171640600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:171634800-171635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:171635200-171635800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:171635200-171649800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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