Variant report

Variant	rs10930438
Chromosome Location	chr2:171606871-171606872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr2:171606780-171607014	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171599446..171601204-chr2:171604629..171607257,2	K562	blood:

Variant related genes	Relation type
EIF2S2P4	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10165379	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10175644	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10181282	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10184230	0.86[YRI][hapmap]
rs10194303	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11895153	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12612710	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12613472	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12619010	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12994793	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13028382	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362489	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1362490	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1894919	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34002163	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3749036	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3764915	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3764916	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4132720	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6433235	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6433238	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6433243	0.86[YRI][hapmap]
rs6433246	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433247	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433248	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66833017	0.92[EUR][1000 genomes]
rs6711176	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6723611	0.86[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6726371	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6733809	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6738022	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6757195	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7580460	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7608979	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs869954	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs953680	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs954321	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9973711	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963746	chr2:171602620-171609432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10930438	MYO3B	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea

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