Variant report

Variant	rs10184230
Chromosome Location	chr2:171602134-171602135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:171571145..171574823-chr2:171602056..171606730,4	K562	blood:
2	chr2:171598979..171601021-chr2:171601414..171603949,2	K562	blood:
3	chr2:171586428..171588996-chr2:171600958..171602689,2	K562	blood:
4	chr2:171598820..171602992-chr2:171626434..171628904,5	K562	blood:
5	chr2:171594157..171598805-chr2:171599016..171605066,9	K562	blood:
6	chr2:171595899..171597682-chr2:171601375..171604248,2	MCF-7	breast:
7	chr2:171598608..171603078-chr2:171626081..171629316,7	K562	blood:
8	chr2:171599691..171602406-chr2:171784049..171787334,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000239467	Chromatin interaction
ENSG00000204335	Chromatin interaction
ENSG00000115806	Chromatin interaction
ENSG00000234350	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10179149	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10181981	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10185519	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10188135	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10193894	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10200830	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10204585	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10211629	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10460355	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10460356	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10930437	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10930438	0.86[YRI][hapmap]
rs11684810	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12472667	0.94[ASN][1000 genomes]
rs12611849	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12614245	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12618173	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12990209	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12994080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009323	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13014069	0.85[ASN][1000 genomes]
rs13015956	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362487	0.93[ASN][1000 genomes]
rs1362491	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1420377	0.94[ASN][1000 genomes]
rs1420382	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1420384	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1477060	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17694506	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17750734	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861463	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1894917	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2058726	0.89[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2216135	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2287109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2356232	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2883885	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28863322	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28892917	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35294186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4233832	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4667649	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4667650	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4667651	0.90[EUR][1000 genomes]
rs4667652	0.88[EUR][1000 genomes]
rs4667658	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668302	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4668303	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4668304	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668305	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668306	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4668312	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668313	0.84[ASN][1000 genomes]
rs4668314	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4668317	0.92[ASN][1000 genomes]
rs5003926	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5003927	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55806232	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58691943	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6433236	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6433237	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6433239	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433240	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6433242	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6433243	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433245	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66624589	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717778	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6717785	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6726174	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6727988	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6732964	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6733809	0.86[YRI][hapmap]
rs6741549	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6746220	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6746374	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6751667	0.93[ASN][1000 genomes]
rs6751987	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6756891	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7556674	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7563812	0.87[ASN][1000 genomes]
rs7572599	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7582102	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7582425	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7582430	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7594247	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7595158	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7608898	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs959463	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959464	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959465	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10184230	AC007405.4	cis	Stomach	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171574000-171620800	Weak transcription	Pancreas	Pancrea
2	chr2:171597600-171603800	Weak transcription	HMEC	breast
3	chr2:171597800-171604000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:171598000-171603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:171600400-171602400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr2:171600800-171602400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr2:171600800-171604000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:171601000-171602200	Enhancers	Fetal Intestine Small	intestine
9	chr2:171601000-171603800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:171601200-171602600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:171601600-171604200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:171601600-171606400	Weak transcription	Gastric	stomach
13	chr2:171601800-171604200	Weak transcription	Stomach Mucosa	stomach
14	chr2:171602000-171604000	Weak transcription	K562	blood

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