Variant report

Variant	rs13014069
Chromosome Location	chr2:171658382-171658383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10179149	0.84[ASN][1000 genomes]
rs10181981	0.84[ASN][1000 genomes]
rs10184230	0.85[ASN][1000 genomes]
rs10185519	0.84[ASN][1000 genomes]
rs10188135	0.84[ASN][1000 genomes]
rs10193894	0.84[ASN][1000 genomes]
rs10200830	0.84[ASN][1000 genomes]
rs10204585	0.85[ASN][1000 genomes]
rs10211629	0.84[ASN][1000 genomes]
rs10460355	0.89[ASN][1000 genomes]
rs10460356	0.91[ASN][1000 genomes]
rs11684810	0.86[ASN][1000 genomes]
rs12472667	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12614245	0.83[ASN][1000 genomes]
rs12994080	0.85[ASN][1000 genomes]
rs13009323	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13015956	0.84[ASN][1000 genomes]
rs1362487	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1420377	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17694506	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17750734	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1894917	0.86[ASN][1000 genomes]
rs2058726	0.91[ASN][1000 genomes]
rs34288552	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34886087	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35294186	0.82[ASN][1000 genomes]
rs4667658	0.88[ASN][1000 genomes]
rs4668312	0.85[ASN][1000 genomes]
rs4668313	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4668314	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4668317	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55806232	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58691943	0.84[ASN][1000 genomes]
rs6433242	0.83[ASN][1000 genomes]
rs6433243	0.85[ASN][1000 genomes]
rs6433245	0.88[ASN][1000 genomes]
rs66624589	0.85[ASN][1000 genomes]
rs6727988	0.84[ASN][1000 genomes]
rs6741549	0.83[ASN][1000 genomes]
rs6746374	0.91[ASN][1000 genomes]
rs6751667	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6756891	0.84[ASN][1000 genomes]
rs7556674	0.84[ASN][1000 genomes]
rs7582425	0.84[ASN][1000 genomes]
rs7582430	0.84[ASN][1000 genomes]
rs7594247	0.83[ASN][1000 genomes]
rs7595158	0.86[ASN][1000 genomes]
rs7608898	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806894	chr2:171651783-171679041	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171629600-171658800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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