Variant report

Variant	rs34886087
Chromosome Location	chr2:171660818-171660819
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10460356	0.81[ASN][1000 genomes]
rs12185692	0.85[ASN][1000 genomes]
rs12472667	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13009323	0.81[ASN][1000 genomes]
rs13014069	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1362487	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1420377	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17694506	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2058726	0.81[ASN][1000 genomes]
rs34288552	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749035	0.82[ASN][1000 genomes]
rs4668313	0.83[EUR][1000 genomes]
rs4668314	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4668317	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6746374	0.81[ASN][1000 genomes]
rs6751667	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806894	chr2:171651783-171679041	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171642400-171669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:171659200-171668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:171660600-171661200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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