Variant report

Variant	rs2160414
Chromosome Location	chr2:171682346-171682347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:171682280-171682430	GM12864	blood:	n/a	n/a
2	CTCF	chr2:171682280-171682430	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:171680203..171683000-chr2:171705982..171708617,2	K562	blood:

Variant related genes	Relation type
GAD1	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16858900	1.00[AFR][1000 genomes]
rs16858920	1.00[AFR][1000 genomes]
rs17694726	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700577	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17700773	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17751683	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1894918	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41393845	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45465192	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45467694	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs45471500	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45473292	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs45486908	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45506192	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs45626540	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4667653	0.80[AMR][1000 genomes]
rs4667654	0.80[AMR][1000 genomes]
rs4667659	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4667661	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4668301	1.00[AFR][1000 genomes]
rs4668310	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668311	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668318	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668319	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4668322	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4668328	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4668330	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56852746	0.86[EUR][1000 genomes]
rs701491	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs769406	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171679600-171688800	Weak transcription	K562	blood
2	chr2:171680200-171688800	Weak transcription	NHDF-Ad	bronchial
3	chr2:171680400-171686800	Weak transcription	Aorta	Aorta
4	chr2:171681000-171682600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:171681200-171682600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:171681200-171693800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:171682200-171682400	Enhancers	Brain Germinal Matrix	brain
8	chr2:171682200-171691600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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