Variant report

Variant	rs11901943
Chromosome Location	chr2:233972490-233972491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:233970725..233973158-chr2:233974725..233977216,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57218566	1.00[EUR][1000 genomes]
rs58480585	1.00[EUR][1000 genomes]
rs61351720	1.00[EUR][1000 genomes]
rs6437087	1.00[EUR][1000 genomes]
rs6708294	1.00[EUR][1000 genomes]
rs6712466	1.00[EUR][1000 genomes]
rs72984248	0.83[AMR][1000 genomes]
rs73094939	1.00[EUR][1000 genomes]
rs73094946	1.00[EUR][1000 genomes]
rs73094949	1.00[EUR][1000 genomes]
rs73094951	1.00[EUR][1000 genomes]
rs73094978	1.00[EUR][1000 genomes]
rs73094980	1.00[EUR][1000 genomes]
rs73094987	1.00[EUR][1000 genomes]
rs73101521	1.00[EUR][1000 genomes]
rs73101525	1.00[EUR][1000 genomes]
rs73107126	1.00[EUR][1000 genomes]
rs9917365	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876009	chr2:233799400-233996429	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv876012	chr2:233899377-233996429	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:233958800-233977600	Weak transcription	Left Ventricle	heart
2	chr2:233964200-233981600	Weak transcription	Pancreas	Pancrea
3	chr2:233964400-233973200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:233965600-233975400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr2:233965800-233988200	Weak transcription	HUVEC	blood vessel
6	chr2:233966000-233972800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:233966000-233973200	Genic enhancers	Primary B cells from peripheral blood	blood
8	chr2:233966000-233974200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:233966000-233977400	Weak transcription	HepG2	liver
10	chr2:233966200-233972800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr2:233966600-233973000	Genic enhancers	GM12878-XiMat	blood
12	chr2:233969200-233974200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr2:233969200-233974200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr2:233969800-233996800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr2:233970200-233972800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:233970400-233973400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr2:233970400-233974200	Genic enhancers	Primary hematopoietic stem cells	blood
18	chr2:233970600-233974000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:233970800-233974200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:233971000-233972600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:233971000-233972600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:233971000-233974200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:233971000-233974400	Enhancers	Fetal Thymus	thymus
24	chr2:233971200-233972800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr2:233971400-233974000	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:233971400-233974200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr2:233971400-233974800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:233971600-233973600	Enhancers	Primary B cells from cord blood	blood
29	chr2:233971600-233974200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr2:233971600-233978200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr2:233971800-233972600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
32	chr2:233971800-233972800	Enhancers	Lung	lung
33	chr2:233971800-233973800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr2:233971800-233974200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:233971800-233974200	Enhancers	Brain Hippocampus Middle	brain
36	chr2:233971800-233974200	Enhancers	Thymus	Thymus
37	chr2:233971800-233978000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr2:233972200-233973800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr2:233972200-233974200	Genic enhancers	Spleen	Spleen
40	chr2:233972200-233977200	Weak transcription	Esophagus	oesophagus
41	chr2:233972400-233973400	Weak transcription	Primary T cells from cord blood	blood
42	chr2:233972400-233985200	Weak transcription	Gastric	stomach

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