Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1033283	0.85[CEU][hapmap]
rs11895588	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904032	0.86[CEU][hapmap]
rs2222231	1.00[CEU][hapmap]
rs2679442	0.86[CEU][hapmap]
rs2679443	0.86[CEU][hapmap]
rs2679444	1.00[CEU][hapmap]
rs2679454	0.86[CEU][hapmap]
rs2679457	0.86[CEU][hapmap]
rs2679458	0.86[CEU][hapmap]
rs2683812	0.86[CEU][hapmap]
rs2683814	0.86[CEU][hapmap]
rs2683846	0.86[CEU][hapmap]
rs2683867	0.86[CEU][hapmap]
rs2714171	0.85[CEU][hapmap]
rs2714201	0.86[CEU][hapmap]
rs2714203	0.86[CEU][hapmap]
rs300353	0.86[CEU][hapmap]
rs300356	1.00[CEU][hapmap]
rs5022756	0.86[CEU][hapmap]
rs6734198	0.86[CEU][hapmap]
rs72981931	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: