Variant report
| Variant | rs300356 |
|---|---|
| Chromosome Location | chr2:141968307-141968308 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1033283 | 0.85[CEU][hapmap] |
| rs11889774 | 1.00[MEX][hapmap] |
| rs11895588 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11902930 | 1.00[CEU][hapmap] |
| rs16845778 | 1.00[MEX][hapmap] |
| rs2222231 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679442 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679443 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679444 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679454 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679457 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2679458 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2683812 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2683814 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2683815 | 1.00[JPT][hapmap] |
| rs2683846 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2683867 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2714171 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2714201 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs2714203 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs300351 | 1.00[MEX][hapmap] |
| rs300353 | 0.82[LWK][hapmap] |
| rs300366 | 1.00[MEX][hapmap] |
| rs300373 | 1.00[MEX][hapmap] |
| rs72981931 | 0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003799 | chr2:141803314-142033675 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1009434 | chr2:141832339-142156180 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1005236 | chr2:141860005-142047695 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv535948 | chr2:141860005-142047695 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
