Variant report

Variant	rs300373
Chromosome Location	chr2:141976620-141976621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11886842	1.00[EUR][1000 genomes]
rs11889774	1.00[MEX][hapmap]
rs11892102	1.00[EUR][1000 genomes]
rs11897933	1.00[EUR][1000 genomes]
rs16845486	1.00[EUR][1000 genomes]
rs16845778	1.00[MEX][hapmap]
rs1850698	0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs300347	1.00[AMR][1000 genomes]
rs300351	1.00[MEX][hapmap]
rs300356	1.00[MEX][hapmap]
rs300366	0.90[LWK][hapmap];1.00[MEX][hapmap]
rs300371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs300372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs300385	1.00[AMR][1000 genomes]
rs300387	1.00[AMR][1000 genomes]
rs300404	0.95[LWK][hapmap]
rs34161362	1.00[EUR][1000 genomes]
rs72976018	1.00[EUR][1000 genomes]
rs72976046	1.00[EUR][1000 genomes]
rs72976049	1.00[EUR][1000 genomes]
rs72981919	1.00[EUR][1000 genomes]
rs72981924	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72992718	1.00[EUR][1000 genomes]
rs72992721	1.00[EUR][1000 genomes]
rs7586992	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3332011	chr2:141974269-141990959	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141974200-141977800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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