Variant report
| Variant | rs1850698 |
|---|---|
| Chromosome Location | chr2:141961820-141961821 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11886842 | 1.00[EUR][1000 genomes] |
| rs11892102 | 1.00[EUR][1000 genomes] |
| rs11897933 | 1.00[EUR][1000 genomes] |
| rs12691596 | 0.83[AFR][1000 genomes] |
| rs16845486 | 1.00[EUR][1000 genomes] |
| rs300347 | 1.00[AMR][1000 genomes] |
| rs300371 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs300372 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs300373 | 0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs300385 | 1.00[AMR][1000 genomes] |
| rs300387 | 1.00[AMR][1000 genomes] |
| rs34161362 | 1.00[EUR][1000 genomes] |
| rs72976018 | 1.00[EUR][1000 genomes] |
| rs72976046 | 1.00[EUR][1000 genomes] |
| rs72976049 | 1.00[EUR][1000 genomes] |
| rs72981919 | 1.00[EUR][1000 genomes] |
| rs72981924 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72992718 | 1.00[EUR][1000 genomes] |
| rs72992721 | 1.00[EUR][1000 genomes] |
| rs7586992 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003799 | chr2:141803314-142033675 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1009434 | chr2:141832339-142156180 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1005236 | chr2:141860005-142047695 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv535948 | chr2:141860005-142047695 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141959000-141963400 | Weak transcription | Fetal Heart | heart |
| 2 | chr2:141960600-141964200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
