Variant report

Variant	rs11903377
Chromosome Location	chr2:10974489-10974490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:10974420-10974570	HEK293	kidney:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:10952771..10956477-chr2:10972417..10975728,4	MCF-7	breast:
2	chr2:10971180..10977465-chr2:11267266..11272931,15	MCF-7	breast:
3	chr2:10973069..10975850-chr2:10977411..10980248,3	MCF-7	breast:
4	chr2:10973065..10975997-chr2:10978928..10980629,2	K562	blood:
5	chr2:10972846..10976528-chr2:10977131..10980647,4	MCF-7	breast:
6	chr2:10972636..10975307-chr2:11052060..11056394,5	MCF-7	breast:
7	chr2:10974186..10977004-chr2:11049663..11052630,3	MCF-7	breast:
8	chr2:10973920..10977755-chr2:11268417..11271773,4	K562	blood:

No data

Variant related genes	Relation type
PDIA6	TF binding region
ENSG00000238962	Chromatin interaction
ENSG00000162975	Chromatin interaction
ENSG00000143870	Chromatin interaction
ENSG00000145063	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1686475	0.82[ASN][1000 genomes]
rs35191150	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4669634	0.82[ASN][1000 genomes]
rs923453	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10970800-10975200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr2:10971600-10974600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:10971600-10975600	Enhancers	HUVEC	blood vessel
4	chr2:10972200-10975600	Enhancers	Fetal Brain Female	brain
5	chr2:10972200-10978800	Enhancers	Fetal Brain Male	brain
6	chr2:10972400-10974800	Enhancers	Colon Smooth Muscle	Colon
7	chr2:10972600-10974800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:10972600-10975200	Weak transcription	A549	lung
9	chr2:10972800-10974800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:10972800-10975200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:10972800-10975400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr2:10972800-10975400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:10973000-10975000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:10973000-10975200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:10973000-10975400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:10973000-10975400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:10973000-10975400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr2:10973000-10975400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr2:10973000-10980200	Weak transcription	Right Atrium	heart
20	chr2:10973200-10975200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr2:10973600-10974600	Enhancers	Brain Substantia Nigra	brain
22	chr2:10973800-10974600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:10974000-10974600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:10974000-10974600	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:10974000-10974800	Enhancers	Brain Angular Gyrus	brain
26	chr2:10974000-10974800	Enhancers	Stomach Smooth Muscle	stomach
27	chr2:10974000-10976000	Enhancers	Fetal Thymus	thymus
28	chr2:10974200-10976000	Enhancers	Placenta	Placenta
29	chr2:10974400-10974600	Bivalent Enhancer	Brain Anterior Caudate	brain
30	chr2:10974400-10974600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr2:10974400-10974600	Enhancers	Spleen	Spleen
32	chr2:10974400-10974800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:10974400-10975800	Enhancers	Fetal Muscle Leg	muscle
34	chr2:10974400-10975800	Enhancers	Stomach Mucosa	stomach
35	chr2:10974400-10977400	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links