Variant report

Variant	rs11904762
Chromosome Location	chr2:67727444-67727445
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170407	1.00[ASN][1000 genomes]
rs11890974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11894777	1.00[AMR][1000 genomes]
rs17033765	1.00[EUR][1000 genomes]
rs28562857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59725517	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59920988	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72897787	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72897797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899935	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72899978	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67713200-67727800	Weak transcription	Pancreas	Pancrea
2	chr2:67725400-67729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:67726000-67729800	Weak transcription	Placenta	Placenta
4	chr2:67726400-67727800	Weak transcription	Fetal Lung	lung
5	chr2:67726400-67730000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:67726800-67728800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:67727200-67728000	Enhancers	Stomach Smooth Muscle	stomach
8	chr2:67727400-67728000	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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