Variant report

Variant	rs11905464
Chromosome Location	chr20:23012830-23012831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1042579	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13045080	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984838	0.89[AFR][1000 genomes]
rs28532517	0.80[AFR][1000 genomes]
rs3176123	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34307615	0.82[AFR][1000 genomes]
rs35902492	0.82[AFR][1000 genomes]
rs35948817	0.80[AFR][1000 genomes]
rs36011369	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs926727	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23011200-23013800	Enhancers	Left Ventricle	heart
3	chr20:23011400-23014600	Enhancers	Dnd41	blood
4	chr20:23011600-23013000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr20:23011800-23013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr20:23012000-23014800	Enhancers	Right Ventricle	heart
7	chr20:23012200-23014000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr20:23012600-23014600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:23012800-23013000	Enhancers	Fetal Heart	heart
10	chr20:23012800-23013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:23012800-23013200	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr20:23012800-23013400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr20:23012800-23014000	Enhancers	Primary hematopoietic stem cells	blood
14	chr20:23012800-23014400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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