Variant report

Variant	rs13045080
Chromosome Location	chr20:23009546-23009547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1042579	0.94[EUR][1000 genomes]
rs11905464	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984836	0.83[AFR][1000 genomes]
rs16984838	0.92[AFR][1000 genomes]
rs2021409	1.00[YRI][hapmap]
rs28532517	0.84[AFR][1000 genomes]
rs3176123	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs34307615	0.85[AFR][1000 genomes]
rs35902492	0.85[AFR][1000 genomes]
rs36011369	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41310177	0.82[AFR][1000 genomes]
rs926727	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23005400-23010800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:23005800-23010200	Enhancers	Primary hematopoietic stem cells	blood
4	chr20:23005800-23010600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:23006000-23010600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:23006000-23010600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr20:23006200-23010200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:23008200-23010400	Enhancers	Dnd41	blood
9	chr20:23008600-23011800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr20:23008800-23009800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:23009000-23010800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr20:23009000-23011600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr20:23009200-23009600	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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