Variant report

Variant	rs41310177
Chromosome Location	chr20:23018831-23018832
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10485638	0.94[ASN][1000 genomes]
rs11905306	0.94[ASN][1000 genomes]
rs13045080	0.82[AFR][1000 genomes]
rs13306849	1.00[AMR][1000 genomes]
rs16984836	0.94[ASN][1000 genomes]
rs16984838	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2021409	0.94[ASN][1000 genomes]
rs28532517	1.00[AMR][1000 genomes]
rs34307615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35888045	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35902492	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35948817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36204270	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23016000-23026000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:23016200-23019200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr20:23016200-23019600	Enhancers	Dnd41	blood
4	chr20:23016200-23020600	Weak transcription	Right Atrium	heart
5	chr20:23016200-23028200	Weak transcription	Aorta	Aorta
6	chr20:23016600-23023600	Weak transcription	Gastric	stomach
7	chr20:23017600-23024600	Weak transcription	Spleen	Spleen
8	chr20:23017800-23020800	Weak transcription	Esophagus	oesophagus
9	chr20:23018000-23019400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:23018800-23019400	Bivalent Enhancer	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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