Variant report

Variant	rs11908081
Chromosome Location	chr20:41582241-41582242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:41581157..41584149-chr20:41593651..41596764,3	K562	blood:

Variant related genes	Relation type
ENSG00000196090	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11905598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907635	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11907965	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11908022	0.85[GIH][hapmap]
rs1812007	0.85[GIH][hapmap]
rs1883536	0.87[GIH][hapmap]
rs206637	0.85[GIH][hapmap]
rs206640	0.85[GIH][hapmap]
rs206650	0.91[AMR][1000 genomes]
rs206651	0.82[AMR][1000 genomes]
rs206652	0.85[GIH][hapmap];0.91[AMR][1000 genomes]
rs206654	0.91[AMR][1000 genomes]
rs206670	0.85[GIH][hapmap]
rs206673	0.82[YRI][hapmap]
rs206683	0.85[GIH][hapmap]
rs208208	0.85[GIH][hapmap]
rs2750074	0.85[GIH][hapmap]
rs535000	0.85[GIH][hapmap]
rs558832	0.85[GIH][hapmap]
rs6016916	0.85[GIH][hapmap]
rs6016917	0.85[GIH][hapmap]
rs6030548	0.85[GIH][hapmap]
rs6072916	0.87[GIH][hapmap]
rs6093764	0.87[GIH][hapmap]
rs6093765	0.87[GIH][hapmap]
rs73273618	0.82[AMR][1000 genomes]
rs73273619	0.82[AMR][1000 genomes]
rs73273624	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73273629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273631	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273632	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73907429	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8115069	0.85[GIH][hapmap]
rs8121056	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060468	chr20:41518010-41700012	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061053	chr20:41521471-41704874	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41579400-41590000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41581000-41585200	Weak transcription	Pancreas	Pancrea
3	chr20:41582000-41583000	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links