Variant report

Variant	rs206652
Chromosome Location	chr20:41576463-41576464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:41566421..41568551-chr20:41574947..41576536,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11905598	0.91[AMR][1000 genomes]
rs11907635	0.91[AMR][1000 genomes]
rs11907965	0.91[AMR][1000 genomes]
rs11908022	1.00[GIH][hapmap]
rs11908081	0.85[GIH][hapmap];0.91[AMR][1000 genomes]
rs1812007	1.00[GIH][hapmap]
rs206637	1.00[GIH][hapmap]
rs206640	1.00[GIH][hapmap]
rs206650	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs206651	0.85[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs206654	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs206670	1.00[GIH][hapmap]
rs206683	1.00[GIH][hapmap]
rs208208	1.00[GIH][hapmap]
rs2750074	1.00[GIH][hapmap]
rs511805	1.00[GIH][hapmap]
rs535000	1.00[GIH][hapmap]
rs558832	1.00[GIH][hapmap]
rs6016916	1.00[GIH][hapmap]
rs6016917	1.00[GIH][hapmap]
rs6030546	1.00[GIH][hapmap]
rs6030548	1.00[GIH][hapmap]
rs73273613	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273614	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273615	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273618	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73273624	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73273629	0.91[AMR][1000 genomes]
rs73273631	0.91[AMR][1000 genomes]
rs73273632	0.91[AMR][1000 genomes]
rs73907429	0.91[AMR][1000 genomes]
rs8115069	1.00[GIH][hapmap]
rs8121056	1.00[GIH][hapmap]
rs8124627	0.83[GIH][hapmap]
rs965018	0.85[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1060468	chr20:41518010-41700012	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1061053	chr20:41521471-41704874	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41560200-41577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr20:41566000-41578000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links