Variant report

Variant	rs8124627
Chromosome Location	chr20:41494512-41494513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11906028	1.00[CEU][hapmap]
rs11907352	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs11908022	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs11908420	1.00[CEU][hapmap]
rs1812007	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs206637	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs206640	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs206652	0.83[GIH][hapmap]
rs206663	1.00[CEU][hapmap]
rs206670	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs206678	1.00[AMR][1000 genomes]
rs206683	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs206684	1.00[CEU][hapmap]
rs208202	1.00[CEU][hapmap]
rs208208	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs208212	1.00[CEU][hapmap]
rs2750074	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs484898	1.00[CEU][hapmap]
rs511805	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs535000	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs558832	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs57007282	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58915514	0.89[AMR][1000 genomes]
rs6016914	1.00[CEU][hapmap]
rs6016916	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6016917	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs6030533	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6030541	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6030546	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs6030547	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs6030548	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6030549	1.00[CEU][hapmap]
rs6030551	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs61687918	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7272450	1.00[CEU][hapmap]
rs73907293	1.00[AMR][1000 genomes]
rs73910603	1.00[AMR][1000 genomes]
rs8115069	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs8121056	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs8126046	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058990	chr20:41289969-41543912	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv544277	chr20:41289969-41543912	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1063450	chr20:41409901-41880620	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1060690	chr20:41413369-41851935	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1066088	chr20:41417205-42060036	Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41487200-41501600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41490400-41494600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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