Variant report

Variant	rs11908145
Chromosome Location	chr20:22980251-22980252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22979981..22982770-chr20:23022858..23025459,2	MCF-7	breast:
2	chr20:22900656..22904360-chr20:22978776..22982262,5	MCF-7	breast:
3	chr20:22979526..22981249-chr20:23001847..23004441,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-THBD-1	chr20:22980224-22980362	NONHSAT079018
2	lnc-THBD-1	chr20:22980224-22980362	NONHSAT079019
3	lnc-THBD-1	chr20:22980224-22980525	NONHSAT079020

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11906022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11908174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16985047	1.00[AMR][1000 genomes]
rs6048495	1.00[AMR][1000 genomes]
rs6075998	0.87[AFR][1000 genomes]
rs6137849	1.00[AMR][1000 genomes]
rs73901932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22978600-22980800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:22979800-22980400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:22980000-22980400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:22980000-22981000	Enhancers	HSMM	muscle
5	chr20:22980000-22981200	Flanking Active TSS	A549	lung
6	chr20:22980200-22980600	Enhancers	NHDF-Ad	bronchial
7	chr20:22980200-22981200	Enhancers	HSMMtube	muscle
8	chr20:22980200-22981600	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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