Variant report

Variant	rs6048495
Chromosome Location	chr20:22982697-22982698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11906022	1.00[AMR][1000 genomes]
rs11908145	1.00[AMR][1000 genomes]
rs11908174	1.00[AMR][1000 genomes]
rs16985047	1.00[AMR][1000 genomes]
rs6036274	1.00[AFR][1000 genomes]
rs6048478	1.00[AFR][1000 genomes]
rs6137849	1.00[AMR][1000 genomes]
rs73901932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22981600-22984600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr20:22981800-22986800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr20:22981800-22988200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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