Variant report

Variant	rs11908240
Chromosome Location	chr20:22822057-22822058
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11905036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11905073	1.00[AFR][1000 genomes]
rs11905574	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6036254	1.00[AMR][1000 genomes]
rs6036273	1.00[AMR][1000 genomes]
rs6048439	1.00[AMR][1000 genomes]
rs6048442	1.00[AMR][1000 genomes]
rs6048480	1.00[AMR][1000 genomes]
rs6113788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22818000-22823600	Weak transcription	Lung	lung
2	chr20:22819000-22822200	Weak transcription	NHEK	skin
3	chr20:22821800-22822600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr20:22821800-22822600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:22822000-22822200	Enhancers	Stomach Mucosa	stomach
6	chr20:22822000-22831600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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