Variant report

Variant	rs6036254
Chromosome Location	chr20:22889626-22889627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11905036	1.00[AMR][1000 genomes]
rs11905574	1.00[AMR][1000 genomes]
rs11908240	1.00[AMR][1000 genomes]
rs6036273	1.00[AMR][1000 genomes]
rs6048424	0.89[AFR][1000 genomes]
rs6048439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6048442	1.00[AMR][1000 genomes]
rs6048480	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22889000-22890800	Enhancers	Dnd41	blood
2	chr20:22889200-22890000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr20:22889200-22890600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr20:22889600-22890400	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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