Variant report

Variant	rs11908936
Chromosome Location	chr21:16529846-16529847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17002087	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17002267	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2014048	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2205439	0.88[CEU][hapmap]
rs2403881	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2823092	0.89[EUR][1000 genomes]
rs2823100	0.89[CEU][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2823125	0.88[CEU][hapmap]
rs741936	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16528000-16536600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:16528200-16530400	Weak transcription	Pancreas	Pancrea
3	chr21:16528200-16536800	Weak transcription	Fetal Heart	heart
4	chr21:16528800-16531600	Weak transcription	Fetal Intestine Large	intestine
5	chr21:16529600-16530000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr21:16529600-16530400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr21:16529600-16531000	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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