Variant report

Variant	rs11909355
Chromosome Location	chr21:28346471-28346472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11909037	1.00[CHB][hapmap]
rs11910955	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11911883	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17663092	1.00[CHB][hapmap]
rs1974414	0.98[EUR][1000 genomes]
rs2830594	0.97[EUR][1000 genomes]
rs2830602	0.94[EUR][1000 genomes]
rs66666114	0.97[EUR][1000 genomes]
rs72635026	0.90[EUR][1000 genomes]
rs72635027	0.97[EUR][1000 genomes]
rs72635028	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635029	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635030	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635031	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635032	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635033	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635034	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635035	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72635036	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73356158	0.98[EUR][1000 genomes]
rs8129090	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9305294	1.00[CHB][hapmap]
rs9636787	0.90[EUR][1000 genomes]
rs9976701	1.00[CHB][hapmap]
rs9977087	1.00[CHB][hapmap]
rs9978597	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv834068	chr21:28179670-28360808	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28340400-28349600	Weak transcription	HSMM	muscle
2	chr21:28346000-28346800	Enhancers	Ovary	ovary
3	chr21:28346000-28349800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr21:28346200-28349800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr21:28346200-28359400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr21:28346400-28346600	Enhancers	Psoas Muscle	Psoas
7	chr21:28346400-28349600	Weak transcription	Osteobl	bone
8	chr21:28346400-28349800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links