Variant report
| Variant | rs2830602 |
|---|---|
| Chromosome Location | chr21:28361889-28361890 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11909355 | 0.94[EUR][1000 genomes] |
| rs11910955 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11911883 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1974414 | 0.97[EUR][1000 genomes] |
| rs2132824 | 0.83[ASN][1000 genomes] |
| rs2830594 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3761334 | 0.81[ASN][1000 genomes] |
| rs3761335 | 0.83[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs66666114 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72635026 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72635027 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72635028 | 0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72635029 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72635030 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72635031 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72635032 | 0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72635033 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72635034 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72635035 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72635036 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72635037 | 0.96[ASN][1000 genomes] |
| rs72635038 | 0.97[ASN][1000 genomes] |
| rs73356158 | 0.97[EUR][1000 genomes] |
| rs8129090 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9636787 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066573 | chr21:28096356-28374354 | Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv1067475 | chr21:28238746-29046707 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:28351800-28416600 | Weak transcription | Ovary | ovary |
| 2 | chr21:28361200-28363800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
