Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11910955	0.94[ASN][1000 genomes]
rs16979458	1.00[EUR][1000 genomes]
rs2132824	0.85[ASN][1000 genomes]
rs2830588	1.00[EUR][1000 genomes]
rs2830594	0.96[ASN][1000 genomes]
rs2830602	0.97[ASN][1000 genomes]
rs3761334	0.83[ASN][1000 genomes]
rs3761335	0.83[ASN][1000 genomes]
rs66666114	0.90[ASN][1000 genomes]
rs72635026	0.82[ASN][1000 genomes]
rs72635027	0.89[ASN][1000 genomes]
rs72635028	0.90[ASN][1000 genomes]
rs72635029	0.96[ASN][1000 genomes]
rs72635030	0.96[ASN][1000 genomes]
rs72635031	0.96[ASN][1000 genomes]
rs72635032	0.96[ASN][1000 genomes]
rs72635033	0.94[ASN][1000 genomes]
rs72635034	0.94[ASN][1000 genomes]
rs72635035	0.94[ASN][1000 genomes]
rs72635036	0.94[ASN][1000 genomes]
rs72635037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8129090	0.95[ASN][1000 genomes]
rs9305295	0.81[ASN][1000 genomes]
rs9636787	0.81[ASN][1000 genomes]
rs9636791	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv834068	chr21:28179670-28360808	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28351800-28416600	Weak transcription	Ovary	ovary
2	chr21:28359400-28361200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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