Variant report

Variant	rs72635037
Chromosome Location	chr21:28356089-28356090
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:28337173..28339180-chr21:28354765..28357609,2	K562	blood:

Variant related genes	Relation type
ENSG00000154736	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11910955	0.95[ASN][1000 genomes]
rs16979458	1.00[EUR][1000 genomes]
rs2132824	0.86[ASN][1000 genomes]
rs2830588	1.00[EUR][1000 genomes]
rs2830594	0.96[ASN][1000 genomes]
rs2830602	0.96[ASN][1000 genomes]
rs3761334	0.84[ASN][1000 genomes]
rs3761335	0.84[ASN][1000 genomes]
rs66666114	0.90[ASN][1000 genomes]
rs72635026	0.83[ASN][1000 genomes]
rs72635027	0.90[ASN][1000 genomes]
rs72635028	0.90[ASN][1000 genomes]
rs72635029	0.96[ASN][1000 genomes]
rs72635030	0.96[ASN][1000 genomes]
rs72635031	0.96[ASN][1000 genomes]
rs72635032	0.96[ASN][1000 genomes]
rs72635033	0.95[ASN][1000 genomes]
rs72635034	0.95[ASN][1000 genomes]
rs72635035	0.95[ASN][1000 genomes]
rs72635036	0.95[ASN][1000 genomes]
rs72635038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8129090	0.94[ASN][1000 genomes]
rs9305295	0.82[ASN][1000 genomes]
rs9636787	0.82[ASN][1000 genomes]
rs9636791	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066573	chr21:28096356-28374354	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1057400	chr21:28104936-28359948	Strong transcription Genic enhancers Bivalent/Poised TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv834068	chr21:28179670-28360808	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1067475	chr21:28238746-29046707	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28346200-28359400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr21:28351800-28416600	Weak transcription	Ovary	ovary

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