Variant report

Variant	rs11910896
Chromosome Location	chr21:17489508-17489509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16994427	1.00[MEX][hapmap]
rs2823730	1.00[TSI][hapmap]
rs9982669	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066951	chr21:17458978-17603160	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv544381	chr21:17458978-17603160	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17485800-17489600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr21:17488600-17489600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr21:17488600-17489800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr21:17488800-17489600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr21:17488800-17490600	Enhancers	Fetal Kidney	kidney
6	chr21:17489000-17490200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
7	chr21:17489200-17490200	Flanking Active TSS	A549	lung
8	chr21:17489200-17490600	Enhancers	HSMM	muscle
9	chr21:17489400-17489600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr21:17489400-17489600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr21:17489400-17489800	Flanking Active TSS	Osteobl	bone
12	chr21:17489400-17490000	Enhancers	Adipose Nuclei	Adipose
13	chr21:17489400-17490200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr21:17489400-17490200	Flanking Active TSS	NH-A	brain
15	chr21:17489400-17490200	Flanking Active TSS	NHDF-Ad	bronchial
16	chr21:17489400-17490600	Active TSS	Aorta	Aorta
17	chr21:17489400-17490600	Flanking Active TSS	HUVEC	blood vessel
18	chr21:17489400-17490800	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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