Variant report

Variant	rs11911935
Chromosome Location	chr21:41513010-41513011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11088509	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11701057	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11701139	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11702402	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12151971	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12152005	0.81[AMR][1000 genomes]
rs12152078	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13046190	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13046360	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13046479	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2297264	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297265	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837452	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837454	0.84[AMR][1000 genomes]
rs2837456	0.86[ASN][1000 genomes]
rs3818650	0.88[ASN][1000 genomes]
rs9977928	0.82[AMR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
3	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:41503000-41513200	Weak transcription	HMEC	breast
5	chr21:41503000-41518400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
7	chr21:41510200-41513200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr21:41510800-41513400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr21:41510800-41525800	Weak transcription	Brain Germinal Matrix	brain
10	chr21:41511000-41513600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr21:41511000-41518600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr21:41513000-41513400	Strong transcription	Fetal Brain Female	brain
13	chr21:41513000-41513800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr21:41513000-41520600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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