Variant report

Variant	rs13046360
Chromosome Location	chr21:41513463-41513464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:41512747..41514506-chr21:41514744..41516922,2	MCF-7	breast:
2	chr21:41510559..41522908-chr21:41685904..41699622,30	MCF-7	breast:
3	chr21:41507356..41527112-chr21:41751014..41762921,70	MCF-7	breast:
4	chr21:41275939..41278547-chr21:41512689..41515373,2	MCF-7	breast:
5	chr21:41513242..41523747-chr21:41704483..41713607,25	MCF-7	breast:
6	chr21:41512480..41518922-chr21:41753940..41761141,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235123	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11088509	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11088510	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11701057	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11701139	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11702152	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11702402	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11911935	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12151971	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12152005	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12152078	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13046190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13046479	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474493	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1474494	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2297264	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297265	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2837452	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2837454	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2837455	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2837456	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2837459	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2837460	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3818650	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4402848	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9977928	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9978469	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9979184	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9979203	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41499000-41517200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:41500600-41516200	Weak transcription	Fetal Brain Male	brain
3	chr21:41500800-41516200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr21:41503000-41518400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr21:41505000-41526400	Weak transcription	Fetal Muscle Leg	muscle
6	chr21:41510800-41525800	Weak transcription	Brain Germinal Matrix	brain
7	chr21:41511000-41513600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr21:41511000-41518600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr21:41513000-41513800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr21:41513000-41520600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr21:41513200-41523200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr21:41513400-41524400	Weak transcription	Fetal Brain Female	brain

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