Variant report

Variant	rs11913875
Chromosome Location	chr22:31101085-31101086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12483846	0.90[ASN][1000 genomes]
rs12484930	0.94[ASN][1000 genomes]
rs13053993	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs136337	0.86[CHB][hapmap]
rs136343	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs136344	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs136345	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs136348	0.82[ASN][1000 genomes]
rs136351	0.81[AMR][1000 genomes]
rs136354	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs136356	0.82[AMR][1000 genomes]
rs136379	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs136380	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs136383	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs136388	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4820025	0.85[AMR][1000 genomes]
rs4820897	0.88[ASN][1000 genomes]
rs4820899	0.81[ASN][1000 genomes]
rs55765123	0.93[ASN][1000 genomes]
rs5749156	0.93[ASN][1000 genomes]
rs5749157	0.91[ASN][1000 genomes]
rs5753281	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs5753284	0.82[ASN][1000 genomes]
rs5753285	0.92[ASN][1000 genomes]
rs5753287	0.87[ASN][1000 genomes]
rs5753290	0.94[ASN][1000 genomes]
rs5753292	0.89[ASN][1000 genomes]
rs5753294	0.90[ASN][1000 genomes]
rs5753295	0.90[ASN][1000 genomes]
rs5753297	0.90[ASN][1000 genomes]
rs5753298	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs5753300	0.82[AMR][1000 genomes]
rs5997737	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61537428	0.91[ASN][1000 genomes]
rs62235882	0.99[ASN][1000 genomes]
rs62235892	0.93[ASN][1000 genomes]
rs7292017	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8184976	0.91[ASN][1000 genomes]
rs909705	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31091800-31102000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr22:31092200-31102200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
4	chr22:31092400-31101800	Weak transcription	Colon Smooth Muscle	Colon
5	chr22:31092400-31101800	Weak transcription	Spleen	Spleen
6	chr22:31094000-31101800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr22:31097400-31102000	Enhancers	NHDF-Ad	bronchial
8	chr22:31097600-31101800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr22:31097600-31102400	Enhancers	Brain Anterior Caudate	brain
10	chr22:31098200-31101600	Weak transcription	Brain Hippocampus Middle	brain
11	chr22:31098200-31102000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr22:31098400-31101600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr22:31098400-31101600	Weak transcription	HSMM	muscle
14	chr22:31098400-31101600	Weak transcription	HSMMtube	muscle
15	chr22:31098400-31101600	Weak transcription	Osteobl	bone
16	chr22:31098400-31101800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr22:31098400-31101800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr22:31098400-31101800	Weak transcription	NH-A	brain
19	chr22:31098400-31102000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr22:31098400-31102800	Weak transcription	NHLF	lung
21	chr22:31099000-31101600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr22:31099600-31103200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr22:31099800-31101400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr22:31099800-31102000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr22:31099800-31102200	Enhancers	Fetal Brain Female	brain
26	chr22:31099800-31103800	Enhancers	Fetal Brain Male	brain
27	chr22:31100000-31103000	Enhancers	Brain Substantia Nigra	brain
28	chr22:31100200-31101200	Enhancers	Fetal Heart	heart
29	chr22:31100200-31101800	Weak transcription	Brain Angular Gyrus	brain
30	chr22:31100200-31102600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr22:31100400-31101800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr22:31100800-31101600	Enhancers	GM12878-XiMat	blood
33	chr22:31100800-31102200	Enhancers	HepG2	liver
34	chr22:31100800-31103200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr22:31101000-31101200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr22:31101000-31101200	Enhancers	Gastric	stomach
37	chr22:31101000-31101200	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr22:31101000-31101200	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr22:31101000-31101800	Enhancers	Pancreas	Pancrea
40	chr22:31101000-31101800	Enhancers	K562	blood
41	chr22:31101000-31102400	Enhancers	Brain Germinal Matrix	brain
42	chr22:31101000-31103000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr22:31101000-31103000	Enhancers	Brain Cingulate Gyrus	brain

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