Variant report

Variant	rs909705
Chromosome Location	chr22:31115722-31115723
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1040422	0.95[AMR][1000 genomes]
rs11913875	0.95[ASN][1000 genomes]
rs12483846	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12484930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13053993	0.85[ASN][1000 genomes]
rs136337	0.82[ASN][1000 genomes]
rs136339	0.80[ASN][1000 genomes]
rs136343	0.84[ASN][1000 genomes]
rs136344	0.84[ASN][1000 genomes]
rs136345	0.84[ASN][1000 genomes]
rs136346	0.82[ASN][1000 genomes]
rs136348	0.84[ASN][1000 genomes]
rs136351	0.83[ASN][1000 genomes]
rs136354	0.83[ASN][1000 genomes]
rs136355	0.83[ASN][1000 genomes]
rs136356	0.83[ASN][1000 genomes]
rs136379	0.88[ASN][1000 genomes]
rs136380	0.96[ASN][1000 genomes]
rs136383	0.94[ASN][1000 genomes]
rs136388	0.91[ASN][1000 genomes]
rs4820025	0.81[ASN][1000 genomes]
rs4820897	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4820899	0.84[ASN][1000 genomes]
rs55765123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5749152	0.86[EUR][1000 genomes]
rs5749156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5749157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5749161	0.82[ASN][1000 genomes]
rs5753270	0.84[EUR][1000 genomes]
rs5753271	0.84[EUR][1000 genomes]
rs5753272	0.84[EUR][1000 genomes]
rs5753273	0.84[EUR][1000 genomes]
rs5753274	0.84[EUR][1000 genomes]
rs5753277	0.86[EUR][1000 genomes]
rs5753279	0.91[EUR][1000 genomes]
rs5753280	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5753281	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5753284	0.85[ASN][1000 genomes]
rs5753285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5753287	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5753290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5753292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5753294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753295	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753297	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5753298	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs5753300	0.83[ASN][1000 genomes]
rs58467547	0.98[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs5997737	0.91[ASN][1000 genomes]
rs61537428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62235878	0.85[EUR][1000 genomes]
rs62235882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62235883	0.84[AMR][1000 genomes]
rs62235892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7292017	0.95[ASN][1000 genomes]
rs73170830	0.83[EUR][1000 genomes]
rs8141331	0.91[AMR][1000 genomes]
rs8184976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs926340	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31112600-31117000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr22:31113800-31132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr22:31114000-31140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr22:31114200-31115800	Weak transcription	Spleen	Spleen
5	chr22:31114200-31116000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr22:31114200-31118000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr22:31114200-31123000	Weak transcription	HUVEC	blood vessel
8	chr22:31114400-31116400	Weak transcription	Brain Angular Gyrus	brain
9	chr22:31114800-31116400	Enhancers	Brain Substantia Nigra	brain
10	chr22:31114800-31118200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:31115000-31115800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr22:31115000-31116000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr22:31115200-31128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:31115400-31116200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr22:31115400-31116400	Weak transcription	Brain Anterior Caudate	brain
16	chr22:31115400-31117200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr22:31115400-31126400	Weak transcription	HSMM	muscle
18	chr22:31115400-31128800	Weak transcription	NHDF-Ad	bronchial
19	chr22:31115600-31149400	Weak transcription	Brain Hippocampus Middle	brain

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