Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1040422	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12483846	0.91[AMR][1000 genomes]
rs12484930	0.91[AMR][1000 genomes]
rs136255	0.84[ASN][1000 genomes]
rs136256	0.84[ASN][1000 genomes]
rs136267	0.96[ASN][1000 genomes]
rs136292	0.96[ASN][1000 genomes]
rs136318	0.95[ASN][1000 genomes]
rs136320	0.93[ASN][1000 genomes]
rs136329	0.93[ASN][1000 genomes]
rs136348	0.80[ASN][1000 genomes]
rs55765123	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5749156	0.91[AMR][1000 genomes]
rs5749157	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5753280	0.83[AMR][1000 genomes]
rs5753281	0.85[AMR][1000 genomes]
rs5753285	0.91[AMR][1000 genomes]
rs5753287	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5753290	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5753292	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5753294	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5753295	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5753297	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58467547	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61537428	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62235882	0.91[AMR][1000 genomes]
rs62235892	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8184976	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs909705	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31168000-31185400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr22:31172800-31189400	Weak transcription	Fetal Heart	heart
4	chr22:31173800-31181600	Weak transcription	Spleen	Spleen
5	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr22:31177600-31182800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:31177800-31185800	Weak transcription	HSMMtube	muscle
8	chr22:31178400-31180600	Enhancers	A549	lung
9	chr22:31178800-31187600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr22:31179800-31181200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr22:31179800-31181400	Enhancers	Fetal Intestine Small	intestine
12	chr22:31179800-31181800	Enhancers	Fetal Intestine Large	intestine
13	chr22:31180400-31181200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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