Variant report

Variant	rs5753279
Chromosome Location	chr22:31094432-31094433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31088691..31091818-chr22:31094131..31098942,6	MCF-7	breast:
2	chr22:31063745..31065263-chr22:31093337..31095261,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167065	Chromatin interaction
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12484930	0.90[EUR][1000 genomes]
rs5749152	0.91[EUR][1000 genomes]
rs5749156	0.91[EUR][1000 genomes]
rs5753270	0.87[EUR][1000 genomes]
rs5753271	0.87[EUR][1000 genomes]
rs5753272	0.87[EUR][1000 genomes]
rs5753273	0.89[EUR][1000 genomes]
rs5753274	0.89[EUR][1000 genomes]
rs5753277	0.91[EUR][1000 genomes]
rs5753280	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5753285	0.91[EUR][1000 genomes]
rs62235878	0.90[EUR][1000 genomes]
rs62235882	0.90[EUR][1000 genomes]
rs73170830	0.88[EUR][1000 genomes]
rs909705	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31091400-31094800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr22:31091600-31097800	Weak transcription	NHLF	lung
3	chr22:31091800-31102000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr22:31092000-31101000	Weak transcription	Gastric	stomach
5	chr22:31092200-31094800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:31092200-31098000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr22:31092200-31102200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr22:31092200-31111000	Weak transcription	Fetal Intestine Small	intestine
9	chr22:31092400-31101800	Weak transcription	Colon Smooth Muscle	Colon
10	chr22:31092400-31101800	Weak transcription	Spleen	Spleen
11	chr22:31092800-31097800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr22:31093200-31095400	Weak transcription	NHDF-Ad	bronchial
13	chr22:31093200-31095600	Enhancers	Brain Cingulate Gyrus	brain
14	chr22:31093200-31099800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr22:31094000-31097600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr22:31094000-31101800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr22:31094200-31095000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr22:31094200-31095600	Weak transcription	Brain Angular Gyrus	brain
19	chr22:31094200-31097600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr22:31094200-31097800	Weak transcription	Brain Hippocampus Middle	brain
21	chr22:31094200-31097800	Weak transcription	Brain Substantia Nigra	brain
22	chr22:31094200-31099800	Weak transcription	Fetal Brain Male	brain
23	chr22:31094200-31099800	Weak transcription	Fetal Brain Female	brain
24	chr22:31094200-31101000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr22:31094200-31101000	Weak transcription	Brain Germinal Matrix	brain
26	chr22:31094400-31094800	Weak transcription	Brain Anterior Caudate	brain
27	chr22:31094400-31095000	Enhancers	K562	blood
28	chr22:31094400-31097800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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