Variant report

Variant	rs73170830
Chromosome Location	chr22:31076386-31076387
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31075909..31077591-chr22:31089407..31091958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184792	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12484930	0.84[EUR][1000 genomes]
rs5749152	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5749156	0.83[EUR][1000 genomes]
rs5753270	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5753271	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753272	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753273	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5753274	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5753277	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5753279	0.88[EUR][1000 genomes]
rs5753280	0.91[EUR][1000 genomes]
rs5753285	0.83[EUR][1000 genomes]
rs62235878	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62235882	0.84[EUR][1000 genomes]
rs909705	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31074400-31078200	Enhancers	Brain Anterior Caudate	brain
2	chr22:31074600-31081400	Weak transcription	Fetal Intestine Small	intestine
3	chr22:31075000-31076800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:31075200-31077000	Enhancers	Brain Angular Gyrus	brain
5	chr22:31075400-31077200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:31075400-31077400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr22:31075400-31077600	Enhancers	Brain Hippocampus Middle	brain
8	chr22:31075400-31078000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:31075600-31076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr22:31075600-31077000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr22:31075600-31077000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:31075800-31077000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr22:31075800-31077000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr22:31075800-31077200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr22:31075800-31077200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr22:31076000-31076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr22:31076000-31076800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr22:31076000-31077000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr22:31076000-31077000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr22:31076000-31077200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:31076000-31077800	Weak transcription	K562	blood
22	chr22:31076000-31078200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr22:31076200-31076600	Weak transcription	Brain Cingulate Gyrus	brain

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