Variant report

Variant	rs62235878
Chromosome Location	chr22:31086472-31086473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12484930	0.86[EUR][1000 genomes]
rs5749152	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5749156	0.85[EUR][1000 genomes]
rs5753270	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753271	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5753272	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs5753273	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs5753274	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs5753277	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs5753279	0.90[EUR][1000 genomes]
rs5753280	0.93[EUR][1000 genomes]
rs5753285	0.85[EUR][1000 genomes]
rs62235882	0.86[EUR][1000 genomes]
rs73170830	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs909705	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv834175	chr22:30976624-31089545	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31077400-31089800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr22:31077400-31090000	Weak transcription	Fetal Heart	heart
3	chr22:31077600-31090000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr22:31078200-31089200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:31086000-31089800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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