Variant report

Variant	rs11915029
Chromosome Location	chr3:113350530-113350531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr3:113350463-113350743	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:113348843-113352858	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:113350300-113350782	GM12878	blood:	n/a	n/a
4	REST	chr3:113350451-113350713	MCF-7	breast:	n/a	n/a
5	REST	chr3:113350524-113350689	K562	blood:	n/a	n/a
6	FOXA1	chr3:113350361-113350738	HepG2	liver:	n/a	n/a
7	FOXA1	chr3:113350360-113350884	HepG2	liver:	n/a	n/a
8	REST	chr3:113350472-113350750	HepG2	liver:	n/a	n/a
9	FOXA1	chr3:113350430-113350748	HepG2	liver:	n/a	n/a
10	POLR2A	chr3:113349955-113350767	GM12878	blood:	n/a	n/a
11	REST	chr3:113350419-113350801	HepG2	liver:	n/a	n/a
12	FOXA2	chr3:113350431-113350732	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113345778..113347609-chr3:113349348..113351544,2	MCF-7	breast:
2	chr3:113349131..113351291-chr3:113414395..113416717,2	MCF-7	breast:

No data

Variant related genes	Relation type
RN7SL767P	TF binding region
ENSG00000176542	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10934240	0.83[YRI][hapmap]
rs16861294	1.00[AMR][1000 genomes]
rs16861297	1.00[AMR][1000 genomes]
rs7632302	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113333600-113352000	Weak transcription	Spleen	Spleen
2	chr3:113338400-113353800	Weak transcription	Stomach Mucosa	stomach
3	chr3:113342600-113375800	Weak transcription	Pancreas	Pancrea
4	chr3:113346000-113352800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:113346600-113353200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:113347200-113350600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:113347400-113351000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:113347800-113350600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr3:113347800-113350800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:113347800-113353600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:113348600-113350600	Enhancers	Fetal Lung	lung
12	chr3:113349200-113350800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr3:113349200-113350800	Genic enhancers	GM12878-XiMat	blood
14	chr3:113349200-113351000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:113349200-113351000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:113349200-113353000	Weak transcription	Thymus	Thymus
17	chr3:113349400-113350600	Enhancers	Fetal Muscle Leg	muscle
18	chr3:113349400-113351000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:113349600-113350600	Enhancers	Primary hematopoietic stem cells	blood
20	chr3:113349600-113350600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:113349600-113350800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr3:113349600-113350800	Enhancers	Primary B cells from peripheral blood	blood
23	chr3:113349800-113350600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:113349800-113350600	Enhancers	HepG2	liver
25	chr3:113349800-113350600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr3:113349800-113350800	Enhancers	Primary B cells from cord blood	blood
27	chr3:113349800-113351600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:113349800-113353000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:113350000-113351600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr3:113350000-113351600	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:113350000-113351800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:113350000-113351800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:113350200-113353400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:113350200-113353600	Weak transcription	Primary T cells from cord blood	blood
35	chr3:113350400-113350600	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr3:113350400-113351200	Weak transcription	Fetal Thymus	thymus
37	chr3:113350400-113355600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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