Variant report

Variant	rs7632302
Chromosome Location	chr3:113396092-113396093
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10934239	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap]
rs11915029	1.00[AMR][1000 genomes]
rs11921407	1.00[ASW][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap]
rs16861294	1.00[AMR][1000 genomes]
rs16861296	0.91[MKK][hapmap]
rs16861297	1.00[AMR][1000 genomes]
rs7648021	0.91[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113376600-113404800	Weak transcription	Hela-S3	cervix
2	chr3:113379000-113403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:113379600-113404800	Weak transcription	Right Ventricle	heart
4	chr3:113380000-113396200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:113380000-113413800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:113380000-113414000	Weak transcription	NH-A	brain
7	chr3:113380200-113404600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:113380800-113413400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:113381000-113404000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:113381400-113404000	Weak transcription	Spleen	Spleen
11	chr3:113382800-113396400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:113384200-113404000	Weak transcription	Aorta	Aorta
13	chr3:113384200-113404600	Weak transcription	Gastric	stomach
14	chr3:113384200-113404600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:113384200-113413600	Weak transcription	Colonic Mucosa	Colon
16	chr3:113387200-113396400	Weak transcription	Stomach Mucosa	stomach
17	chr3:113387200-113398000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:113387200-113401200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:113387200-113404000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:113387200-113412000	Weak transcription	Fetal Kidney	kidney
21	chr3:113387400-113396200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:113387400-113396200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:113387400-113397600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:113387400-113401600	Weak transcription	Small Intestine	intestine
25	chr3:113387400-113404800	Weak transcription	NHDF-Ad	bronchial
26	chr3:113387800-113396400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:113387800-113404800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:113388200-113396400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:113389000-113396400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:113389000-113396600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:113389200-113396200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr3:113389600-113396400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr3:113390000-113396200	Strong transcription	Fetal Thymus	thymus
34	chr3:113390200-113396200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr3:113390200-113396600	Strong transcription	Primary T cells from cord blood	blood
36	chr3:113390600-113396800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:113390800-113396400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr3:113390800-113396600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:113391000-113396600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:113391400-113396400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr3:113391600-113396600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr3:113391600-113397000	Weak transcription	HUVEC	blood vessel
43	chr3:113391800-113396600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:113392400-113396400	Strong transcription	Adipose Nuclei	Adipose
45	chr3:113392400-113396400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:113392600-113399000	Weak transcription	Brain Germinal Matrix	brain
47	chr3:113392800-113396200	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr3:113392800-113399800	Weak transcription	Fetal Stomach	stomach
49	chr3:113392800-113401000	Weak transcription	Fetal Intestine Small	intestine
50	chr3:113392800-113404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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