Variant report

Variant	rs11921407
Chromosome Location	chr3:113357893-113357894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113349929..113352273-chr3:113355787..113358146,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241529	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10934239	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10934240	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11914863	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11918910	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11920913	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12486414	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12490048	0.86[AMR][1000 genomes]
rs12491540	1.00[ASN][1000 genomes]
rs12492542	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12492783	0.86[AMR][1000 genomes]
rs12493602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12493935	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12494777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12495298	1.00[ASN][1000 genomes]
rs16861230	0.86[AMR][1000 genomes]
rs16861233	0.86[AMR][1000 genomes]
rs16861235	0.86[AMR][1000 genomes]
rs16861296	0.83[MKK][hapmap]
rs2292512	1.00[MEX][hapmap];0.86[AMR][1000 genomes]
rs2566972	0.85[MEX][hapmap]
rs3773686	0.86[AMR][1000 genomes]
rs57010522	0.93[AMR][1000 genomes]
rs58929900	0.85[ASN][1000 genomes]
rs7632302	1.00[ASW][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap]
rs7648021	0.83[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113342600-113375800	Weak transcription	Pancreas	Pancrea
2	chr3:113353800-113358400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:113354600-113362000	Weak transcription	Primary B cells from cord blood	blood

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