Variant report
| Variant | rs12493935 |
|---|---|
| Chromosome Location | chr3:113360975-113360976 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:113358772..113361559-chr3:113361679..113365443,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10934239 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10934240 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11914863 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11918910 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11920913 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11921407 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12486414 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12489192 | 0.87[AMR][1000 genomes] |
| rs12490048 | 0.81[AMR][1000 genomes] |
| rs12490651 | 0.87[AMR][1000 genomes] |
| rs12491540 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12492290 | 0.87[AMR][1000 genomes] |
| rs12492542 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12492783 | 0.81[AMR][1000 genomes] |
| rs12493602 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12494777 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12495298 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12495713 | 0.87[AMR][1000 genomes] |
| rs12496604 | 0.87[AMR][1000 genomes] |
| rs12496617 | 0.81[AMR][1000 genomes] |
| rs12497754 | 0.87[AMR][1000 genomes] |
| rs16861230 | 0.81[AMR][1000 genomes] |
| rs16861233 | 0.81[AMR][1000 genomes] |
| rs16861235 | 0.81[AMR][1000 genomes] |
| rs16861331 | 0.87[AMR][1000 genomes] |
| rs2292512 | 0.81[AMR][1000 genomes] |
| rs3773686 | 0.81[AMR][1000 genomes] |
| rs57010522 | 0.87[AMR][1000 genomes] |
| rs58929900 | 0.83[AMR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013506 | chr3:112890608-113680951 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 2 | nsv1004000 | chr3:113116778-113513899 | Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:113342600-113375800 | Weak transcription | Pancreas | Pancrea |
| 2 | chr3:113354600-113362000 | Weak transcription | Primary B cells from cord blood | blood |
