Variant report

Variant	rs11915552
Chromosome Location	chr3:119920245-119920246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119811197..119816198-chr3:119916960..119920972,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082701	Chromatin interaction
ENSG00000242622	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10049256	0.83[ASN][1000 genomes]
rs10934512	0.83[ASN][1000 genomes]
rs10934514	0.85[ASN][1000 genomes]
rs10934515	0.83[ASN][1000 genomes]
rs10934516	0.83[ASN][1000 genomes]
rs10934517	0.83[ASN][1000 genomes]
rs11707711	0.80[ASN][1000 genomes]
rs12152218	0.83[ASN][1000 genomes]
rs1352458	0.83[ASN][1000 genomes]
rs1488761	0.83[ASN][1000 genomes]
rs1488764	0.83[ASN][1000 genomes]
rs1907681	0.83[ASN][1000 genomes]
rs2014133	0.80[AMR][1000 genomes]
rs2035671	0.83[ASN][1000 genomes]
rs2130000	0.83[ASN][1000 genomes]
rs2171598	0.83[ASN][1000 genomes]
rs2319541	0.83[ASN][1000 genomes]
rs2319542	0.83[ASN][1000 genomes]
rs2319543	0.83[ASN][1000 genomes]
rs2874023	0.83[ASN][1000 genomes]
rs4676804	0.80[ASN][1000 genomes]
rs4676809	0.83[ASN][1000 genomes]
rs4676822	0.83[ASN][1000 genomes]
rs4676832	0.80[ASN][1000 genomes]
rs6438567	0.83[ASN][1000 genomes]
rs6764549	0.83[ASN][1000 genomes]
rs6776122	0.83[ASN][1000 genomes]
rs6777971	0.80[ASN][1000 genomes]
rs6805050	0.83[ASN][1000 genomes]
rs7637828	0.83[ASN][1000 genomes]
rs7641838	0.83[ASN][1000 genomes]
rs7642171	0.83[ASN][1000 genomes]
rs7653263	0.83[ASN][1000 genomes]
rs7653396	0.83[ASN][1000 genomes]
rs902790	0.83[ASN][1000 genomes]
rs902791	0.83[ASN][1000 genomes]
rs902792	0.83[ASN][1000 genomes]
rs902794	0.83[ASN][1000 genomes]
rs923726	0.83[ASN][1000 genomes]
rs923727	0.83[ASN][1000 genomes]
rs923728	0.83[ASN][1000 genomes]
rs9289142	0.83[ASN][1000 genomes]
rs9289143	0.83[ASN][1000 genomes]
rs979682	0.83[ASN][1000 genomes]
rs9813834	0.83[ASN][1000 genomes]
rs9841122	0.83[ASN][1000 genomes]
rs9842302	0.83[ASN][1000 genomes]
rs9853082	0.83[ASN][1000 genomes]
rs9857123	0.83[ASN][1000 genomes]
rs9858566	0.83[ASN][1000 genomes]
rs9868058	0.85[ASN][1000 genomes]
rs9868312	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv877376	chr3:119824037-120119446	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119896400-119921400	Weak transcription	Ovary	ovary
2	chr3:119897000-119921400	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:119911800-119921400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:119916000-119921800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:119916600-119921800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:119917400-119921800	Weak transcription	HMEC	breast
7	chr3:119917800-119921400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:119917800-119921400	Weak transcription	Psoas Muscle	Psoas
9	chr3:119917800-119921800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:119918400-119921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:119918600-119923200	Weak transcription	Lung	lung
12	chr3:119919400-119920400	Enhancers	Fetal Thymus	thymus
13	chr3:119919600-119922000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:119919600-119923400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr3:119919800-119921200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr3:119920000-119922400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:119920200-119921400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:119920200-119921800	Weak transcription	Fetal Kidney	kidney

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