Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10084664	0.93[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap]
rs10514735	0.93[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap]
rs11721040	0.85[EUR][1000 genomes]
rs11923173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11925878	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11926925	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12714640	0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs13078807	0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs13085840	0.90[EUR][1000 genomes]
rs13098327	0.88[TSI][hapmap]
rs13320560	0.87[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap]
rs13320610	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1448611	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap]
rs1597213	0.85[EUR][1000 genomes]
rs4091991	0.88[ASN][1000 genomes]
rs4134358	0.84[ASN][1000 genomes]
rs6549060	0.81[ASN][1000 genomes]
rs6762778	0.82[ASN][1000 genomes]
rs7621179	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap]
rs7622475	0.88[TSI][hapmap]
rs7622544	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7640660	0.85[EUR][1000 genomes]
rs7646410	0.93[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap]
rs9309991	0.90[EUR][1000 genomes]
rs9831465	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs9837525	0.90[EUR][1000 genomes]
rs9840565	0.87[CHB][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9852859	0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs9873441	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv10799	chr3:85878639-85884972	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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