Variant report

Variant	rs13078807
Chromosome Location	chr3:85884150-85884151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85877448..85879251-chr3:85882149..85884941,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11721040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11915638	0.91[TSI][hapmap]
rs11926524	1.00[CEU][hapmap]
rs12714637	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12714640	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13059866	1.00[CHD][hapmap];1.00[MKK][hapmap]
rs13068138	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13078960	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13085840	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13096280	1.00[CHD][hapmap];0.91[MKK][hapmap]
rs13098327	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs13327074	1.00[CHD][hapmap];1.00[YRI][hapmap]
rs1448612	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1597213	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs17355368	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2122042	0.89[CEU][hapmap];0.88[TSI][hapmap]
rs7355953	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap]
rs7620339	0.84[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs7622475	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7638804	1.00[YRI][hapmap]
rs7640660	0.89[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7640855	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9309990	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9309991	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9309994	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9309995	1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs9818122	0.89[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs9820014	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9826482	1.00[CEU][hapmap]
rs9834708	1.00[CHD][hapmap];0.95[MKK][hapmap]
rs9837525	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9852127	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9852478	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9852859	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9869320	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9873441	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9875880	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9877300	1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv10799	chr3:85878639-85884972	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

Variant related diseases (count:2)

Disease	PMID	Source
Body mass index	20935630	GWAS catalog
Obesity	23563607	GWAS catalog

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85884000-85884200	Enhancers	Brain Hippocampus Middle	brain

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