Variant report
| Variant | rs11926524 |
|---|---|
| Chromosome Location | chr3:85860075-85860076 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11721040 | 0.94[EUR][1000 genomes] |
| rs11926477 | 0.83[YRI][hapmap] |
| rs12714637 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs12714640 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13068138 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs13078807 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13078960 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs13085840 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13098327 | 1.00[CEU][hapmap] |
| rs1448612 | 1.00[CEU][hapmap] |
| rs1597213 | 0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17355368 | 1.00[CEU][hapmap] |
| rs2122042 | 0.89[CEU][hapmap] |
| rs7620339 | 0.84[CEU][hapmap] |
| rs7622475 | 1.00[CEU][hapmap] |
| rs7640660 | 0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7640855 | 1.00[CEU][hapmap] |
| rs9309990 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs9309991 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9309994 | 1.00[CEU][hapmap] |
| rs9818122 | 0.89[CEU][hapmap] |
| rs9820014 | 1.00[CEU][hapmap] |
| rs9826482 | 1.00[CEU][hapmap] |
| rs9837525 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9852127 | 0.93[CEU][hapmap] |
| rs9852478 | 1.00[CEU][hapmap] |
| rs9852859 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9869320 | 1.00[CEU][hapmap] |
| rs9873441 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9875880 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
