Variant report
| Variant | rs11926477 |
|---|---|
| Chromosome Location | chr3:85860047-85860048 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10511069 | 1.00[AMR][1000 genomes] |
| rs11914610 | 0.86[YRI][hapmap] |
| rs11919968 | 1.00[AMR][1000 genomes] |
| rs11924201 | 1.00[AMR][1000 genomes] |
| rs11926524 | 0.83[YRI][hapmap] |
| rs13320595 | 1.00[AMR][1000 genomes] |
| rs13325188 | 1.00[AMR][1000 genomes] |
| rs13353520 | 1.00[AMR][1000 genomes] |
| rs17023257 | 0.83[AMR][1000 genomes] |
| rs17023295 | 0.86[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17023810 | 1.00[AMR][1000 genomes] |
| rs28611113 | 1.00[AMR][1000 genomes] |
| rs56787903 | 1.00[AMR][1000 genomes] |
| rs57661808 | 1.00[AMR][1000 genomes] |
| rs58770804 | 1.00[AMR][1000 genomes] |
| rs59605482 | 1.00[AMR][1000 genomes] |
| rs6762825 | 1.00[AMR][1000 genomes] |
| rs6764756 | 1.00[AMR][1000 genomes] |
| rs72906501 | 1.00[AMR][1000 genomes] |
| rs72908509 | 1.00[AMR][1000 genomes] |
| rs72908511 | 1.00[AMR][1000 genomes] |
| rs72908512 | 1.00[AMR][1000 genomes] |
| rs72908516 | 1.00[AMR][1000 genomes] |
| rs72908517 | 1.00[AMR][1000 genomes] |
| rs72908522 | 1.00[AMR][1000 genomes] |
| rs72908582 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72908587 | 1.00[AMR][1000 genomes] |
| rs72908602 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72910511 | 1.00[AMR][1000 genomes] |
| rs72910559 | 1.00[AMR][1000 genomes] |
| rs72912429 | 1.00[AMR][1000 genomes] |
| rs72912437 | 1.00[AMR][1000 genomes] |
| rs72914830 | 1.00[AMR][1000 genomes] |
| rs72914833 | 1.00[AMR][1000 genomes] |
| rs72914835 | 1.00[AMR][1000 genomes] |
| rs72914844 | 1.00[AMR][1000 genomes] |
| rs72914849 | 1.00[AMR][1000 genomes] |
| rs9856802 | 1.00[AMR][1000 genomes] |
| rs9872154 | 1.00[AMR][1000 genomes] |
| rs9874223 | 1.00[AMR][1000 genomes] |
| rs9876097 | 1.00[AMR][1000 genomes] |
| rs9880094 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
