Variant report

Variant	rs72908517
Chromosome Location	chr3:85840159-85840160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11919968	1.00[AMR][1000 genomes]
rs11924201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13320595	1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023257	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17023295	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611113	1.00[AMR][1000 genomes]
rs56787903	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	1.00[AMR][1000 genomes]
rs58770804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6762825	1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72906501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908509	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908511	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908522	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910559	1.00[AMR][1000 genomes]
rs72912429	1.00[AMR][1000 genomes]
rs72914830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914833	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914835	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914849	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9856802	1.00[AMR][1000 genomes]
rs9872154	1.00[AMR][1000 genomes]
rs9874223	1.00[AMR][1000 genomes]
rs9876097	1.00[AMR][1000 genomes]
rs9880094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85839400-85840200	Enhancers	Brain Hippocampus Middle	brain
2	chr3:85839400-85840200	Enhancers	Brain Substantia Nigra	brain
3	chr3:85839800-85840200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:85839800-85840200	Enhancers	Aorta	Aorta
5	chr3:85839800-85840200	Enhancers	Brain Angular Gyrus	brain
6	chr3:85839800-85840600	Enhancers	Brain Inferior Temporal Lobe	brain

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